I am sram, a computer engineer. I enjoy mixing the computer sciences with complex systems, microbiology, mathematics and physics.
Some projects:
- Bosque: Phylogenetic analyses
- Trebol: Comparative genomics
- Tundra: Displaying taxonomic structures of microbial communities
- GOIPRO: Visualization of Gene Ontologies and IPRO proteins
- gview: Visualization of microbial genomes
- kodpot: analisis of genomic sequences in terms of protein-coding potential
- Random abstract art: Just reload the page until you get something you like
- NCCA: Cellular automata visualization
- AECA: Asynchronous Cellular automata visualization
Some publications:
- Astorga-Elo, M., Ramirez-Flandes, S., DeLong, E. F., & Ulloa, O. (2015). Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone. The ISME journal.
- Goles, E., Montalva-Medel, M., Mortveit, H., & Ramirez-Flandes, S. (2015). Block Invariance in Elementary Cellular Automata. Journal of Cellular Automata, 10.
- Murillo, A. A., Ramirez-Flandes, S., DeLong, E. F., & Ulloa, O. (2014). Enhanced metabolic versatility of planktonic sulfur-oxidizing g-proteobacteria in an oxygen-deficient coastal ecosystem. Frontiers in marine sciences, 1, 18.
- Ramírez-Flandes S. & O. Ulloa (2008). Bosque: Integrated phylogenetic analysis software. Bioinformatics, 24(21):2539-2541; doi:10.1093/bioinformatics/btn466.
- Molina, V., O. Ulloa, L. Farías, H. Urrutia, S. Ramírez, P. Junier & K.-P. Witzel (2007). Ammonia-oxidizing ß-proteobacteria from the oxygen minimum zone off northern Chile. Applied and Environmental Microbiology, 73: 35-47-3555.
Salvador Ramirez Flandes (sram@udec.cl), Chile.